{"id":23,"date":"2026-03-05T15:42:32","date_gmt":"2026-03-05T13:42:32","guid":{"rendered":"https:\/\/webs.uab.cat\/bgd\/?page_id=23"},"modified":"2026-03-09T15:58:34","modified_gmt":"2026-03-09T13:58:34","slug":"publications","status":"publish","type":"page","link":"https:\/\/webs.uab.cat\/bgd\/publications\/","title":{"rendered":"Publications"},"content":{"rendered":"\n

2026<\/h2>\n\n\n\n

PSMC-FAC: A Statistical Framework for Correcting Loss of Heterozygosity in Low-Coverage Genomic Demographic Inference<\/a><\/h5>\n\n\n\n

Iglesias-Santos, F., Nieto, A., Casillas, S.<\/a>, Barbadilla, A.<\/a> & Sarabia, C., 1 Mar 2026, In: Preprints. (preprint)<\/p>\n\n\n\n

2025<\/h2>\n\n\n\n
Footprints of Worldwide Adaptation in Structured Populations of Drosophila melanogaster Through the Expanded DEST 2.0 Genomic Resource<\/a><\/h5>\n\n\n\n

Nunez, J. C. B., Coronado-Zamora, M.<\/a>, Gautier, M., Kapun, M., Steindl, S., Ometto, L., Hoedjes, K., Beets, J., Wiberg, R. A. W., Mazzeo, G. R., Bass, D. J., Radionov, D., Kozeretska, I., Zinchenko, M., Protsenko, O., Serga, S. V., Amor-Jimenez, C., Casillas, S.<\/a>, S\u00e1nchez-Gracia, A. & Patenkovic, A. & 82 others<\/a>, , 18 Aug 2025, In: Molecular Biology and Evolution.<\/a> 8, msaf132.<\/p>\n\n\n\n

2024<\/h2>\n\n\n\n
An efficient and robust ABC approach to infer the rate and strength of adaptation<\/a><\/h5>\n\n\n\n

Casillas, S.<\/a>, Barbadilla, A.<\/a>, Uricchio, L. & Enard, D., 14 Feb 2024, In: G3: Genes, Genomes, Genetics.<\/a> 14, 23 p.<\/p>\n\n\n\n

Multiple Genomic Landscapes of Recombination and Genomic Divergence in Wild Populations of House Mice\u2014The Role of Chromosomal Fusions and Prdm9<\/a><\/h5>\n\n\n\n

Mar\u00edn-Garc\u00eda, C., \u00c1lvarez-Gonz\u00e1lez, L., Mar\u00edn-Gual, L., Casillas, S.<\/a>, Pic\u00f3n, J., Yam, K., Garcias-Ramis, M. M., Vara, C., Ventura, J., Ruiz-Herrera, A.<\/a> & Larracuente, A. (Editor), 21 Mar 2024, In: Molecular Biology and Evolution.<\/a> 41, 4, 16 p., msae063.<\/p>\n\n\n\n

2023<\/h2>\n\n\n\n
An efficient and robust ABC approach to infer the rate and strength of adaptation<\/a><\/h5>\n\n\n\n

Murga-Moreno, J.,\u00a0Casillas, S.<\/a>, Barbadilla, A., Uricchio, L. & Enard, D.,\u00a028 Sept 2023,\u00a039 p. (preprint)<\/p>\n\n\n\n

2022<\/h2>\n\n\n\n
impMKT: the imputed McDonald and Kreitman test, a straightforward correction that significantly increases the evidence of positive selection of the McDonald and Kreitman test at the gene level<\/a><\/h5>\n\n\n\n

Murga-Moreno, J., Coronado-Zamora, M.<\/a>, Casillas, S.<\/a> & Barbadilla, A.<\/a>, Oct 2022, In: G3: Genes, Genomes, Genetics.<\/a> 12, 10, 14 p., jkac206.<\/p>\n\n\n\n

PopHumanVar : an interactive application for the functional characterization and prioritization of adaptive genomic variants in humans<\/a><\/h5>\n\n\n\n

Colomer-Vilaplana, A., Murga-Moreno, J., Canalda-Baltrons, A., Inserte, C., Soto, D., Coronado-Zamora, M.<\/a>, Barbadilla, A.<\/a> & Casillas, S.<\/a>, 2022, In: Nucleic acids research. 50, D1, p. D1069-D1076 8 p.<\/p>\n\n\n\n

2021<\/h2>\n\n\n\n
Drosophila Evolution over Space and Time (DEST) – A New Population Genomics Resource<\/a><\/h5>\n\n\n\n

Glaser-Schmitt, A., Jelic, M., Gallardo-Jim\u00e9nez, F. D., Puerma, E., Tauber, E., Schou, M. F., Fabian, D. K., Ullastres, A., Kapun, M., Espinosa-Jimenez, M. L., Bogaerts-M\u00e1rquez, M., Merenciano, M., Outten, J., Rota-Stabelli, O., Buend\u00eda-Ru\u00edz, A. J., Wheat, C. W., Guio, L., Paris, M., Patenkovic, A. & Lazzaro, B. P. & 31 others<\/a>, , 9 Dec 2021, In: Molecular Biology and Evolution.<\/a> 38, 12, p. 5782-5805 24 p.<\/p>\n\n\n\n

2020<\/h2>\n\n\n\n
Germline de novo mutation rates on exons versus introns in humans<\/a><\/h5>\n\n\n\n

Rodriguez-Galindo, M., Casillas, S.<\/a>, Weghorn, D. & Barbadilla, A.<\/a>, 2020, In: Nature Communications. 11<\/p>\n\n\n\n

2019<\/h2>\n\n\n\n
Genome-Wide Patterns of Sequence Divergence of Protein-Coding Genes between Drosophila buzzatii and D. mojavensis<\/a><\/h5>\n\n\n\n

Guill\u00e9n, Y., Casillas, S.<\/a> & Ruiz, A., 7 Jan 2019, In: Journal of Heredity.<\/a> 110, 1, p. 92-101 10 p.<\/p>\n\n\n\n

IMKT: The integrative McDonald and Kreitman test<\/a><\/h5>\n\n\n\n

Murga-Moreno, J., Coronado-Zamora, M.<\/a>, Hervas, S., Casillas, S.<\/a> & Barbadilla, A.<\/a>, 1 Jul 2019, In: Nucleic acids research. 47, W1, p. W283-W288<\/p>\n\n\n\n

Large expert-curated database for benchmarking document similarity detection in biomedical literature search<\/a><\/h5>\n\n\n\n

RELISH Consortium, 2019, In: Database.<\/a> 2019, p. 1-67 67 p.<\/p>\n\n\n\n

PopHumanScan: The online catalog of human genome adaptation<\/a><\/h5>\n\n\n\n

Murga-Moreno, J., Coronado-Zamora, M.<\/a>, Bodel\u00f3n, A., Barbadilla, A.<\/a> & Casillas, S.<\/a>, 8 Jan 2019, In: Nucleic Acids Research. 47, D1, p. D1080-D1089<\/p>\n\n\n\n

2018<\/h2>\n\n\n\n
PopHuman: The human population genomics browser<\/a><\/h5>\n\n\n\n

Casillas, S.<\/a>, Mulet, R., Villegas-Mir\u00f3n, P., Hervas, S., Sanz, E., Velasco, D., Bertranpetit, J., Laayouni, H. & Barbadilla, A.<\/a>, 1 Jan 2018, In: Nucleic Acids Research. 46, D1, p. D1003-D1010 8 p.<\/p>\n\n\n\n

2017<\/h2>\n\n\n\n
Molecular population genetics<\/a><\/h5>\n\n\n\n

Casillas, S.<\/a> & Barbadilla, A.<\/a>, Mar 2017, In: Genetics.<\/a> 205, 3, p. 1003-1035 33 p.<\/p>\n\n\n\n

PopFly: the Drosophila population genomics browser<\/a><\/h5>\n\n\n\n

Hervas, S., Sanz, E., Casillas, S.<\/a>, Pool, J. E. & Barbadilla, A.<\/a>, 1 Sept 2017, In: Bioinformatics (Oxford, England). 33, 17, p. 2779-2780 2 p.<\/p>\n\n\n\n

2014<\/h2>\n\n\n\n
Genomics of ecological adaptation in cactophilic Drosophila<\/a><\/h5>\n\n\n\n

Guill\u00e9n, Y., Rius, N., Delprat, A., Williford, A., Muyas, F., Puig, M.<\/a>, Casillas, S.<\/a>, R\u00e0mia, M., Egea, R., Negre, B., Mir, G., Camps, J.<\/a>, Moncunill, V., Ruiz-Ruano, F. J., Cabrero, J., De Lima, L. G., Dias, G. B., Ruiz, J. C., Kapusta, A. & Garcia-Mas, J. & 10 others<\/a>, , 27 Dec 2014, In: Genome Biology and Evolution.<\/a> 7, 1, p. 349-366 18 p.<\/p>\n\n\n\n

2012<\/h2>\n\n\n\n
PopDrowser: The population drosophila browser<\/a><\/h5>\n\n\n\n

R\u00e0mia, M., Librado, P., Casillas, S.<\/a>, Rozas, J. & Barbadilla, A.<\/a>, Feb 2012, In: Bioinformatics. 28, 4, p. 595-596 2 p., btr691.<\/p>\n\n\n\n

The Drosophila melanogaster Genetic Reference Panel<\/a><\/h5>\n\n\n\n

Mackay, T., Richards, S., Stone, E., Barbadilla, A.<\/a>, Ayroles, J., Zhu, D., Casillas, S.<\/a>, Han, Y., Magwire, M. & Cridland, J. M., 1 Feb 2012, In: Nature. 482, 7384, p. 173-178<\/p>\n\n\n\n

2011<\/h2>\n\n\n\n
MASISH: A database for gene expression in maize seeds<\/a><\/h5>\n\n\n\n

Miquel, M., L\u00f3pez-Ribera, I., R\u00e0mia, M., Casillas, S.<\/a>, Barbadilla, A.<\/a> & Vicient, C. M., Feb 2011, In: Bioinformatics. 27, 3, p. 435-436 2 p., btq654.<\/p>\n\n\n\n

2008<\/h2>\n\n\n\n
Standard and generalized McDonald-Kreitman test: a website to detect selection by comparing different classes of DNA sites.<\/a><\/h5>\n\n\n\n

Egea, R., Casillas, S.<\/a> & Barbadilla, A.<\/a>, 1 Jul 2008, In: Nucleic acids research. 36, p. W157-162 8 p.<\/p>\n\n\n\n

2007<\/h2>\n\n\n\n
Drosophila polymorphism database (DPDB) a portal for nucleotide polymorphism in Drosophila<\/a><\/h5>\n\n\n\n

Casillas, S.<\/a>, Egea, R., Petit, N., Bergman, C. M. & Barbadilla, A.<\/a>, 2007, In: Fly.<\/a> 1, 4, p. 205-211 7 p.<\/p>\n\n\n\n

MamPol: A database of nucleotide polymorphism in the Mammalia class<\/a><\/h5>\n\n\n\n

Egea, R., Casillas, S.<\/a>, Fern\u00e1ndez, E., Senar, M. \u00c0.<\/a> & Barbadilla, A.<\/a>, Jan 2007, In: Nucleic acids research. 35, SUPPL. 1, p. D624-D629<\/p>\n\n\n\n

Protein polymorphism is negatively correlated with conservation of intronic sequences and complexity of expression patterns in Drosophila melanogaster<\/a><\/h5>\n\n\n\n

Petit, N., Casillas, S.<\/a>, Ruiz, A. & Barbadilla, A.<\/a>, May 2007, In: Journal of Molecular Evolution.<\/a> 64, 5, p. 511-518 8 p.<\/p>\n\n\n\n

Purifying selection maintains highly conserved noncoding sequences in Drosophila<\/a><\/h5>\n\n\n\n

Casillas, S.<\/a>, Barbadilla, A.<\/a> & Bergman, C. M., Oct 2007, In: Molecular Biology and Evolution.<\/a> 24, 10, p. 2222-2234 13 p.<\/p>\n\n\n\n

2006<\/h2>\n\n\n\n
Fast sequence evolution of Hox and Hox-derived genes in the genus Drosophila<\/a><\/h5>\n\n\n\n

Casillas, S.<\/a>, Negre, B., Barbadilla, A.<\/a> & Ruiz, A., 12 Dec 2006, In: BMC Evolutionary Biology. 6, 15 p., 106.<\/p>\n\n\n\n

PDA v.2: Improving the exploration and estimation of nucleotide polymorphism in large datasets of heterogeneous DNA<\/a><\/h5>\n\n\n\n

Casillas, S.<\/a> & Barbadilla, A.<\/a>, Jul 2006, In: Nucleic Acids Research. 34, WEB. SERV. ISS., p. W632-W634 3 p.<\/p>\n\n\n\n

2005<\/h2>\n\n\n\n
Conservation of regulatory sequences and gene expression patterns in the disintegrating Drosophila Hox gene complex<\/a><\/h5>\n\n\n\n

Negre, B., Casillas, S.<\/a>, Suzanne, M., S\u00e1nchez-Herrero, E., Akam, M., Nefedov, M., Barbadilla, A.<\/a>, De Jong, P. & Ruiz, A., 1 May 2005, In: Genome Research.<\/a> 15, 5, p. 692-700 9 p.<\/p>\n\n\n\n

DPDB: A database for the storage, representation and analysis of polymorphism in the Drosophila genus<\/a><\/h5>\n\n\n\n

Casillas, S.<\/a>, Petit, N. & Barbadilla, A.<\/a>, 1 Sept 2005, In: Bioinformatics. 21, SUPPL. 2, p. ii26-ii30 5 p.<\/p>\n\n\n\n

2004<\/h2>\n\n\n\n
PDA: A pipeline to explore and estimate polymorphism in large DNA databases<\/a><\/h5>\n\n\n\n

Casillas, S.<\/a> & Barbadilla, A.<\/a>, 1 Jul 2004, In: Nucleic Acids Research. 32, p. W166-W169 4 p.<\/p>\n","protected":false},"excerpt":{"rendered":"

2026 PSMC-FAC: A Statistical Framework for Correcting Loss of Heterozygosity in Low-Coverage Genomic Demographic Inference Iglesias-Santos, F., Nieto, A., Casillas, S., Barbadilla, A. & Sarabia, C., 1 Mar 2026, In: Preprints. (preprint) 2025 Footprints of Worldwide Adaptation in Structured Populations of Drosophila melanogaster Through the Expanded DEST 2.0 Genomic Resource Nunez, J. C. B., Coronado-Zamora, M., […]<\/p>\n","protected":false},"author":563,"featured_media":0,"parent":0,"menu_order":0,"comment_status":"closed","ping_status":"closed","template":"","meta":{"footnotes":""},"class_list":["post-23","page","type-page","status-publish","hentry"],"_links":{"self":[{"href":"https:\/\/webs.uab.cat\/bgd\/wp-json\/wp\/v2\/pages\/23","targetHints":{"allow":["GET"]}}],"collection":[{"href":"https:\/\/webs.uab.cat\/bgd\/wp-json\/wp\/v2\/pages"}],"about":[{"href":"https:\/\/webs.uab.cat\/bgd\/wp-json\/wp\/v2\/types\/page"}],"author":[{"embeddable":true,"href":"https:\/\/webs.uab.cat\/bgd\/wp-json\/wp\/v2\/users\/563"}],"replies":[{"embeddable":true,"href":"https:\/\/webs.uab.cat\/bgd\/wp-json\/wp\/v2\/comments?post=23"}],"version-history":[{"count":7,"href":"https:\/\/webs.uab.cat\/bgd\/wp-json\/wp\/v2\/pages\/23\/revisions"}],"predecessor-version":[{"id":89,"href":"https:\/\/webs.uab.cat\/bgd\/wp-json\/wp\/v2\/pages\/23\/revisions\/89"}],"wp:attachment":[{"href":"https:\/\/webs.uab.cat\/bgd\/wp-json\/wp\/v2\/media?parent=23"}],"curies":[{"name":"wp","href":"https:\/\/api.w.org\/{rel}","templated":true}]}}