Publications – High Performance Computing Applications for Science and Engineering

2016

2016, Josefina Lenis and Miquel Angel Senar. Optimized Execution Strategies for Sequence Aligners on NUMA Architectures. PBio 2016 – 4th International Workshop on Parallelism in Bioinformatics
2016, Javier Navarro, Porfidio Hernández, Sebastián Ramos-Onsins, and Gonzalo Vera. Improving Bioinformatics Analysis of Large Sequence Datasets Parallelizing Tools for Population Genomics. PBio 2016 – 4th International Workshop on Parallelism in Bioinformatics
2016, Pablo Enfedaque, Juan Carlos Moure, and Francesc Auli-Llinas. Bitplane Image Coding with parallel coefficient processing. IEEE Transactions on Image Processing 25 209-219
2016, D. Hernandez-Juarez, A. M. López, Juan Carlos Moure, David Vázquez, Antonio Espinosa, and Alejandro Chacón. Embedded real-time stereo estimation via Semi-Global Matching on the GPU. International Conference on Computational Science 2016 80 143-153
2016, Paola Caymes-Scutari, Tomàs Margalef, Anna Sikora, and Germán Bianchini. Environment for Automatic Development and Tuning of Parallel Applications. POMCO Workshop POMCO Workshop 743-750
2016, María Laura Tardivo, Ana Cortés, Miguel Méndez-Garabetti, Gemán Bianchini, and Paola Caymes-Scutari. Three Evolutionary Statistical Parallel Methods for Uncertainty Reduction in Wildland Fire Prediction. POMCO Workshop 721-728
2016, Gemma Sanjuán, Ana Cortés, and Tomás Margalef. Accelerating Schur Complement Domain Decomposition Method for Wind Field Calculation. International Conference on Computational and Mathematical Methods in Science and Engineering, CMMSE 1132-1143
2016, Gemma Sanjuán, Ana Cortés, and Tomás Margalef. Accelerating Preconditioned Conjugate Gradient solver in Wind Field Calculation. International Conference on High Performance Computing & Simulation 294-301
2016, Angel Farguell, Vicent Altava, Tomás Margalef, Josep R. Miró, Ana Cortés, and Jordi Moré. Reducing Data Uncertainty in Surface Meteorology using Data Assimilation: A Comparison Study. International Conference on Computational Science 80 1846 – 1855
2016, Tomàs Artés, Tomás Margalef, and Ana Cortés. Large Forest Fire Spread Prediction: Data and Computational Science. International Conference on Computational Science 80 909 – 918
2016, Carlos Carrillo, Tomás Margalef, Ana Cortés, and Tomàs Artés. Error Impact in Dynamic Data-Driven Framework Applied to Forest Fire Spread Prediction. International Conference on Computational Science 80 418-427
2016, . Applying domain decomposition to wind field calculation. Parallel Computing 57 185-196
2016, Gemma Sanjuan, Ana Cortes, and Tomás Margalef. Hybrid application to accelerate Wind Field calculation. Journal of Computational Science
2016, Gemma Sanjuan, Ana Cortés, Tomàs Margalef, and Carlos Brun. Determining map partitioning to minimize wind field uncertainty in forest fire propagation prediction.. Journal of Computational Science 14 28-37
2016, Cesar Acevedo, Víctor Méndez, Antonio Espinosa, and Porfidio Hernández. A Data-aware multi workflow cluster scheduler. International conference on complex information systems

2015

2015, Pablo Enfedaque, Juan Carlos Moure, and Francesc Auli-Llinas. Strategies of SIMD computing for image coding in GPU. IEEE International Conference on High Performance Computing (HiPC 2015)
2015, Eduardo César, Anna Sikora, and Gertvjola Saveta. Master-Worker Plugin. The Periscope Tuning Framework 125-146
2015, Eduardo César, Joan Sorribes, Tomàs Margalef, Anna Sikora, and Gertvjola Saveta. MPI Parameters Plugin. Automatic Tuning of HPC Applications: The Periscope Tuning Framework 63-82
2015, Anna Sikora, Josep Jorba, and Tomàs Margalef. Automated and Dynamic Abstraction of MPI Application Performance. Cluster Computing 28
2015, Oriol Tintó, Jesús Labarta, Francisco-Javier Doblas, Ana Cortés, Oriol Mula-Valls, Kim Serradell, and Miguel Castrillo. Entendiendo el rendimiento de aplicaciones científicas de clima. Actas de las Jornadas de Paralelismo 2015 (JP2015)
2015, Josefina Lenis and Miquel A. Senar. On the Performance of BWA on NUMA Architectures.. Proc. of IEEE TrustCom/BigDataSE/ISPA Conference 3 236-241
2015, Carlos Montemuiño, Sebastian Ramos-Onsins, Porfidio Hernández, Gonzalo Vera, Juan C. Moure, and Antonio Espinosa. Approaching long genomic regions and large recombination rates with msParSm as an alternative to MaCS. Evolutionary Bioinformatics
2015, Pablo Enfedaque, Juan C. Moure, and Francesc Auli-Llinas. Bitplane Image Coding with parallel coefficient processing. IEEE Transactions on Image Processing 25 209-219
2015, Pablo Enfedaque, A. M. López, Juan Carlos Moure, and Francesc Auli-Llinas. Strategies of SIMD computing for image coding in GPU. IEEE International Conference on High Performance Computing (HiPC 2015)
2015, Eduardo César, Remo Suppi, Anna Sikora, Juan Carlos Moure, Tomàs Margalef, Antonio Espinosa, and Ana Cortés. Teaching Parallel Programming in Interdisciplinary Studies.. Euro-Par Workshops
2015, Claudio Márzquez, Joan Sorribes, and Eduardo César. Graph-Based Automatic Dynamic Load Balancing for HPC Agent-Based Simulations.. Euro-Par Workshops
2015, César Allande, Eduardo César, Anna Sikora, and Josep Jorba Esteve. Performance model based on memory footprint for OpenMP memory bound applications.. PARCO
2015, Francesc Auli-Llinas, Victor Sanchez:, Ian Blanes, Juan C. Moure, and Pablo Enfedaque. Strategy of Microscopic Parallelism for Bitplane Image Coding.. DCC
2015, Pablo Enfedaque, Juan C. Moure, and Francesc Auli-Llinas. Implementation of the DWT in a GPU through a Register-based Strategy. IEEE Trans. Parallel Distrib. Syst. 26(12) 3394-3406
2015, Alejandro Chacón, Juan Carlos Moure, Paolo Ribeca, Antonio Espinosa, and Santiago Marco-Sola. Boosting the FM-Index on the GPU: Effective Techniques to Mitigate Random Memory Access.. IEEE Trans. Parallel Distrib. Syst. 26(12) 3394-3406

2014

2014, Alberto Montañola, Porfidio Hernández, and Concepció Roig. Efficient mapping of genomic sequences to optimize multiple pairwise alignment in hybrid cluster platforms.. J. Integrative Bioinformatics 11(3)
2014, Claudia Rosas, Eduardo César, Antonio Espinosa, Andreu Moreno, Josep Jorba, and Anna Sikora. Dynamic tuning of the workload partition factor and the resource utilization in data-intensive applications. Future Generation Comp. Syst. 37
2014, Pablo Enfedaque, Juan Carlos Moure, and Francesc Auli-Llinas. Implementation of the DWT in a GPU through a Register-based Strategy. IEEE Transactions on Parallel and Distributed Systems
2014, Genaro Costa, Tomàs Margalef, Josep Jorba, and Anna Sikora. GMATE: Dynamic Tuning of Parallel Applications in Grid Environment. Journal of Grid Computing 12
2014, Alejandro Chacón, Juan Carlos Moure, Paolo Ribeca, Antonio Espinosa, and Santiago Marco-Sola. Boosting the FM-index on the GPU: effective techniques to mitigate random memory access. IEEE/ACM Transactions on Computational Biology and Bioinformatics
2014, Tomàs Artés, Ana Cortés, Tomàs Margalef, and Andrés Cencerrado. Enhancing computational efficiency on forest fire forecasting by time-aware Genetic Algorithms. The Journal of Supercomputing
2014, Andrea Martínez, Joan Sorribes, Eduardo César, and Anna Sikora. ELASTIC: A large scale dynamic tuning environment. Scientific Programming 22
2014, Claudia Rosas, Eduardo César, Andreu Moreno, Josep Jorba, and Anna Sikora. Improving Performance on Data-Intensive Applications Using a Load Balancing Methodology Based on Divisible Load Theory. International Journal of Parallel Programming 42
2014, Alejandro Chacón, Antonio Espinosa, and Juan Carlos Moure. Thread-Cooperative, bit-parallel computation of Levenshtein distance on GPU (ICS 2014). 28th ACM International Conference on Supercomputing pp 103 – 112
2014, César Allande, Eduardo César, Anna Sikora, and Josep Jorba. A Performance Model for OpenMP Memory Bound Applications in Multisocket Systems. International conference on computational science 2014
2014, Muhammad Asif, Ana Cortés, Francisco Doblas-Reyes, Domingo Manubens, Oriol Mula-Valls, and Andrés Cencerrado. Impact of I/O and Data Management in Ensemble Large Scale Climate Forecasting Using EC-Earth3. Procedia Computer Science. International Conference on Computational Science 29
2014, Aprigio Bezerra, Juan Carlos Moure, Antonio Espinosa, and Porfidio Hernández. Job Scheduling in Hadoop with Shared Input Policy and RAMDISK. 2014 IEEE International Conference on Cluster Computing
2014, Gemma Sanjuan, Ana Cortés, Tomàs Margalef, and Carlos Brun. Determining map partitioning to accelerate wind field calculation. International Conference on High Performance Computing & Simulation 2014 pp. 96 – 103
2014, Claudio Márzquez, Joan Sorribes, and Eduardo César. Impact of Message Filtering on HPC Agent Based Simulations. European Simulation and Modelling Conference 2014 pp. 65 – 72
2014, Abel Castellanos, Tomàs Margalef, Joan Sorribes, and Andreu Moreno. Predictiong performance of hybrid Master/Worker applications using model-based regression trees. IEEE International Conference on High Performance Computing and Comunications pp. 355 – 362

2013

2013, K. Wendt, T. Margalef, and A. Cortés. Parameter Calibration Framework for Environmental Emergency. Simulation Modelling Practice and Theory, 31C, 10-21
2013, G. Costa, T, Margalef, J. Jorba, and A. Sikora. GMATE: Dynamic tuning of parallel applications in grid environments. Journal of Grid Computing DOI: 10.1007/s10723-013-9287-y
2013, A. Cencerrado, T. Margalef, and A. Cortés. Applying Probability Theory for the Quality Assessment of a Wildfire Spread Prediction Framework Based on Genetic Algorithms. The Scientific World Journal, vol 2013, DOI:10.1155/2013/728414
2013, C. Rosas, E. Cesar, A. Espinosa, A. Moreno, J. Jorba, and A. Sikora. Dynamic tuning of the workload partition factor and the resource utilization in data-intensive applications. Future Generation Computer Systems DOI:10.1016/j.future.2013.12.002
2013, O. Timoneda, A. Sánchez, A. Tomàs, A. Castelló, G. Vera, R. Egea, J. I. Núñez, and I. Balcells. miRNA Expression Profile Analysis in Kidney of Different Porcine Breeds. PLOS ONE, 8, e55402
2013, Carlos Brun, Ana Cortés, and Tomàs Margalef. Coupling Diagnostic and Prognostic Models to a Dynamic Data Driven Forest Fire Spread Prediction System. ICCS 1851-1860
2013, Tomàs Artés, Tomàs Margalef, Ana Cortés, and Andrés Cencerrado. Relieving the Effects of Uncertainty in Forest Fire Spread Prediction by Hybrid MPI-OpenMP Parallel Strategies. ICCS 2278-2287
2013, Alejandro Chacón, Porfidio Hernández, Antonio Espinosa, and Juan Carlos Moure. n-step FM-Index for Faster Pattern Matching. ICCS 70-79
2013, Dario Rodriguez-Aseretto, Jesus San-Miguel-Ayanz, Ana Cortés, Margherita Di Leo, and Daniele de Rigo. A Data-Driven Model for Large Wildfire Behaviour Prediction in Europe. ICCS 1861-1870
2013, Tharso Ferreira, Porfidio Hernández, Juan Carlos Moure, and Antonio Espinosa. An Optimization for MapReduce Frameworks in Multi-core Architectures. ICCS 2587-2590
2013, Andrea Mart’ınez, Joan Sorribes, Eduardo César, and Anna Sikora. How to Determine the Topology of Hierarchical Tuning Networks for Dynamic Auto-Tuning in Large-Scale Systems. ICCS 1352-1361
2013, Alberto Montañola, Porfidio Hernández, and Concepcio Roig. Pairwise Sequence Alignment Method for Distributed Shared Memory Systems. PDP 432-436
2013, Alberto Montañola, Cédric Notredame, Porfidio Hernández, Fernando Guirado, and Concepció Roig. Performance analysis of computational approaches to solve Multiple Sequence Alignment. The Journal of Supercomputing 64 69-78
2013, Kerstin Wendt, Tomàs Margalef, and Ana Cortés. Parameter calibration framework for environmental emergency models. Simulation Modelling Practice and Theory 31 10-21

2012

2012, A. Moreno, T. Margalef, J. Sorribes, A. Guevara, and E. César. Load Balancing in homogeneous pipeline based applications. Parallel Computing, 38, 125-139
2012, A. Cencerrado, T. Margalef, A. Cortés, and R. Rodríguez. Urgency versus Accuracy: Dynamic Data Driven Application System for Natural Hazard Management. International Journal of Numerical Analysis and Modelling, 9, 432-448
2012, Hisham Ihshaish, Miquel A. Senar, and Ana Cortés. Parallel Multi-level Genetic Ensemble for Numerical Weather Prediction Enhancement. Procedia CS 9 276-285
2012, Hisham Ihshaish, Miquel A. Senar, and Ana Cortés. Towards Improving Numerical Weather Predictions by Evolutionary Computing Techniques. Procedia CS 9 1056-1063
2012, Miquel Orobitg, Ana Ripoll, Cédric Notredame, Carsten Kemena, Fernando Guirado, and Fernando Cores. Enhancing the Scalability of Consistency-based Progressive Multiple Sequences Alignment Applications. IPDPS 71-82
2012, A. Espinosa, Ana Ripoll, J. Protasio, Juan C. Moure, and Porfidio Hernández. Analysis and improvement of map-reduce data distribution in read mapping applications. The Journal of Supercomputing 62 1305-1317
2012, Jairo Serrano, Barton P. Miller, Eduardo César, and Elisa Heymann. Computer Sciences Department. Computing and Informatics 31 103-118
2012, Renato Miceli, François Bodin, Laurent Morin, Martin Sandrieser, Siegfried Benkner, Carmen B. Navarrete, Houssam Haitof, Michael Gerndt, Eduardo César, Anna Sikora, and Gilles Civario. AutoTune: A Plugin-Driven Approach to the Automatic Tuning of Parallel Applications. PARA 328-342
2012, Andrea Mart’ınez, Joan Sorribes, Eduardo César, and Anna Sikora. Hierarchical MATE’s approach for dynamic performance tuning of large-scale parallel applications. IPCCC 191-192
2012, Claudia Rosas, Eduardo César, Andreu Moreno, Josep Jorba, and Anna Sikora. Dynamic Tuning of the Workload Partition Factor in Data-Intensive Applications. HPCC-ICESS 216-223
2012, Paola Caymes-Scutari, Emilio Luque, Tomàs Margalef, and Anna Morajko. A methodology for transparent knowledge specification in a dynamic tuning environment. Softw., Pract. Exper. 42 281-302
2012, Andrés Cencerrado, Tomàs Margalef, and Ana Cortés. On the Way of Applying Urgent Computing Solutions to Forest Fire Propagation Prediction. Procedia CS 9 1657-1666
2012, Carlos Brun, Ana Cortés, Tomàs Margalef, and Tomàs Artées. Coupling Wind Dynamics into a DDDAS Forest Fire Propagation Prediction System. Procedia CS 9 1110-1118
2012, Andrés Cencerrado, Tomàs Margalef, and Ana Cortés. Genetic Algorithm Characterization for the Quality Assessment of Forest Fire Spread Prediction. Procedia CS 9 312-320
2012, Andreu Moreno, Tomàs Margalef, Joan Sorribes, Andreu Guevara, and Eduardo César. Load balancing in homogeneous pipeline based applications. Parallel Computing 38 125-139

2011

2011, L. Pesquer, X. Pons, and A. Cortés. Parallel ordinary Kriging interpolation incorporating automatic variogram fitting. Computers & Geosciences. 37 – 4, 464 – 473
2011, John Corredor, Emilio Luque, Daniel Franco, Dolores Rexachs, and Juan Carlos Moure. Performance Behavior Prediction Scheme for Shared-Memory Parallel Applications. CLUSTER 566-569
2011, Mauricio Hanzich, Josep L. Lérida, Francesc Solsona, Francesc Giné, and Porfidio Hernández. On/Off-Line Prediction Applied to Job Scheduling on Non-Dedicated NOWs. J. Comput. Sci. Technol. 26 99-116
2011, Vicente Ivars, Elisa Heymann, and Miquel A. Senar. TDP-Shell: A Generic Framework to Improve Interoperability between Batch Queue Systems and Monitoring Tools. CLUSTER 522-526
2011, Maria del Mar Lopez, Miquel A. Senar, and Elisa Heymann. Scheduling Workflows in Opportunistic Environments. CLUSTER 517-521
2011, Claudia Rosas, Eduardo César, Josep Jorba, and Anna Morajko. Workload Balancing Methodology for Data-Intensive Applications with Divisible Load. SBAC-PAD 48-55
2011, Kerstin Wendt, Tomàs Margalef, Ana Cortés, and Mónica Denham. Evolutionary Optimisation Techniques to Estimate Input Parameters in Environmental Emergency Modelling. Computational Optimization and Applications in Engineering and Industry 125-143
2011, Lluís Pesquer, Xavier Pons, Ivette Serral, and Ana Cortés. Geostatistical analysis of Landsat-TM lossy compression images in a high-performance computing environment. 8183
2011, Lluís Pesquer, Xavier Pons, and Ana Cortés. Parallel ordinary kriging interpolation incorporating automatic variogram fitting. Computers & Geosciences 37 464–473
2011, Andrés Cencerrado, Tom‘as Margalef, and Ana Cortés. Prediction Time Assessment in a DDDAS for Natural Hazard Management: Forest Fire Study CaseI. Procedia Computer Science 4 1761–1770

2010

2010, G. Vera and R. Suppi. Towards the evolution of legacy applications to multicore systems – experiences parallelizing R. Bioinformatics, 26, 250-256ompartir a l´hora d´el.laborar els pressupostos municipals : subvencionar els comerços, hostalers i serveis que contractin treballadors de Cerdanyola en atur. Ens sembla que és una bona mesura que pot a
2010, P. di Tommaso, C. Notredame, A. Espinosa, F. Cores, E. Guirado, and M. Orobitg. Cloud-Coffee: implementation of a parallel consistency-based multiple alignment algorithm in the t-coffee package and its benchmarking on the Amazon Elastic-cloud. Bioinformatics, 26, 1903-1904
2010, M. A. Swertz, et al, G. Vera, D. Arends, R. A. Scheltema, B. M. Tesson, and K. J. van der Velde. XGAP: a uniform and extensible data model and software platform for genotype and phenotype experiments. Genome Biology, 11, 1-12v
2010, Gonzalo Vera and Remo Suppi. Integration of Heterogeneous and Non-dedicated Environments for R. CCGRID 667-672
2010, Gonzalo Vera and Remo Suppi. Towards the Evolution of Legacy Applications to Multicore Systems – Experiences Parallelizing R. BIOINFORMATICS 250-256
2010, Gonzalo Vera and Remo Suppi. ATLS – A parallel loop scheduling scheme for dynamic environments. Procedia CS 1 583-591
2010, John Corredor, Emilio Luque, Daniel Franco, Dolores Rexachs, and Juan C. Moure. Selecting a Suitable Multicore System for Shared-memory Parallel Applications. PDPTA 228-234
2010, Domingo Benitez, Emilio Luque, Dolores Rexachs, and Juan C. Moure. A reconfigurable cache memory with heterogeneous banks. DATE 825-830
2010, John Corredor, Emilio Luque, Daniel Franco, Dolores Rexachs, and Juan C. Moure. Active learning processes to study memory hierarchy on Multicore systems. Procedia CS 1 921-930
2010, Jose Ramon Garc’ıa, Porfidio Hernández, and Josep L. Lérida. Scheduling Soft Real-Time Applications on NOWs. PDP 59-63
2010, Manuel Brugnoli, Miquel A. Senar, and Elisa Heymann. Grid Scheduling Based on Collaborative Random Early Detection Strategies. PDP 35-42
2010, G. Martinez, Miquel A. Senar, and Elisa Heymann. Integrating scheduling policies into workflow engines. Procedia CS 1 2743-2752
2010, Xiaoyuan Yang, Emilio Luque, Ana Ripoll, Porfidio Hernández, and Fernando Cores. Designing an effective P2P system for a VoD system to exploit the multicast communication. J. Parallel Distrib. Comput. 70 1175-1192
2010, James A. Kupsch, Eduardo César, Elisa Heymann, and Barton P. Miller. First principles vulnerability assessment. CCSW 87-92
2010, Paola Caymes-Scutari, Emilio Luque, Tomàs Margalef, and Anna Morajko. Scalable dynamic Monitoring, Analysis and Tuning Environment for parallel applications. J. Parallel Distrib. Comput. 70 330-337

2009

2009, Y. Li, R. C. Jansen, R. Breitling, J. Fu, G. Vera, and M. A. Swertz. designGG: an R-package and web tool for the optimal design of genetical genomics experiments. BMC Bioinformatics, 10, 188-198
2009, J. Mercade, T. Maes, P. Puigdomenec, J. Segura, R. Adrados, J. Adsuara, and A. Espinosa. Orymold: ontology based gene expression data integration and analysis tool applied to rice. BMC Bioinformatics, 10, 158-170
2009, Jaume Mercadé, Tamara Maes, Jordi Segura, Rosa Adrados, José-Enrique Adsuara, and Antonio Espinosa. Orymold: ontology based gene expression data integration and analysis tool applied to rice. BMC Bioinformatics 10
2009, Daniel Lázaro Iglesias, Josep Jorba Esteve, and Joan Manuel Marquès. A Best-Effort Mechanism for Service Deployment in Contributory Computer Systems. CISIS 439-444
2009, Yang Li, Ritsert C. Jansen, Rainer Breitling, Jingyuan Fu, Gonzalo Vera, and Morris A. Swertz. designGG: an R-package and web tool for the optimal design of genetical genomics experiments. BMC Bioinformatics 10
2009, Diego Lugones, Paolo Faraboschi, Daniel Ortega, Ayose Falcón, Eduardo Argollo, Emilio Luque, Juan C. Moure, Dolores Rexachs, and Daniel Franco. High-speed network modeling for full system simulation. IISWC 24-33
2009, Rodrigo Godoi, Porfidio Hernández, and Alvaro Chalar. Assessing Control Impact Over a P2P-VoD System. PDPTA 339-344
2009, Rodrigo Godoi, Porfidio Hernández, and Alvaro Chalar. Cost models for Failure Management on a Peer to peer VoD system. ICIP 897-900
2009, Jose Ramon Garc’ıa, Porfidio Hernández, and Josep L. Lérida. Resource manager with multi-core support for parallel desktop. CLUSTER 1-4
2009, Felix Wolf, Anna Morajko, Thilo Kielmann, Soonhoi Ha, Luiz De Rose, and Andy D. Pimentel. Introduction. Euro-Par 7-8
2009, . Euro-Par 2008 Workshops – Parallel Processing, VHPC 2008, UNICORE 2008, HPPC 2008, SGS 2008, PROPER 2008, ROIA 2008, and DPA 2008, Las Palmas de Gran Canaria, Spain, August 25-26, 2008, Revised Selected Papers. Euro-Par Workshops 5415
2009, Andreu Moreno, Emilio Luque, Tomàs Margalef, Joan Sorribes, and Eduardo César. Task distribution using factoring load balancing in Master-Worker applications. Inf. Process. Lett. 109 902-906
2009, Ana Cortés. Half-Duplex Dynamic Data Driven Application System for Forest Fire Spread Prediction. 1–7
2009, Mónica Denham, Tomás Margalef, and Ana Cortés. Parallel Dynamic Data Driven Genetic Algorithm for Forest Fire Prediction. Parallel Virtual Machine / Message Passing Interface 323–324
2009, Andrés Cencerrado, Ana Cortés, and Miquel A. Senar. Support for Urgent Computing Based on Resource Virtualization. International Conference on Computational Science 227–236

2008

2008, Gonzalo Vera, Remo Suppi, and Ritsert C. Jansen. R/parallel – speeding up bioinformatics analysis with R. BMC Bioinformatics 9
2008, Rudi Alberts, Ritsert C. Jansen, and Gonzalo Vera. affyGG: computational protocols for genetical genomics with Affymetrix arrays. Bioinformatics 24 433-434
2008, Josep L. Lérida, Porfidio Hernández, Jose Ramon Garc’ıa, Francesc Giné, and Francesc Solsona. Resource Matching in Non-dedicated Multicluster Environments. VECPAR 160-173
2008, Rodrigo Godoi, Porfidio Hernández, and Xiaoyuan Yang. Analytical Evaluation of Clients’ Failures in a LVoD Architecture Based on P2P and Multicast Paradigms. Euro-Par 856-865
2008, Josep L. Lérida, Porfidio Hernández, Mauricio Hanzich, Jose Ramon Garc’ıa, Francesc Giné, and Francesc Solsona. Enhancing Prediction on Non-dedicated Clusters. Euro-Par 233-242
2008, E. Fernandez, Miquel A. Senar, Elisa Heymann, and Andrés Cencerrado. CrossBroker: A Grid Metascheduler for Interactive and Parallel Jobs. Computing and Informatics 27 187-197
2008, Andreu Moreno, Emilio Luque, Tomàs Margalef, Joan Sorribes, Andreu Guevara, and Eduardo César. Dynamic Pipeline Mapping (DPM). Euro-Par 295-304
2008, Oleg Morajko, Emilio Luque, Tomàs Margalef, and Anna Morajko. On-Line Performance Modeling for MPI Applications. Euro-Par 68-77
2008, I. Salawdeh, Emilio Luque, Tomàs Margalef, Anna Morajko, and Eduardo César. Performance Model for Parallel Mathematical Libraries Based on Historical Knowledgebase. Euro-Par 110-119
2008, . Euro-Par 2008 – Parallel Processing, 14th International Euro-Par Conference, Las Palmas de Gran Canaria, Spain, August 26-29, 2008, Proceedings. Euro-Par 5168
2008, Genaro Costa, Emilio Luque, Tomàs Margalef, Anna Morajko, and Josep Jorba. Performance models for dynamic tuning of parallel applications on Computational Grids. CLUSTER 376-385
2008, Roque Rodriguez, Emilio Luque, Tom ´ as Margalef, and Ana Cortés. An Adaptive System for Forest Fire Behavior Prediction. IEEE International Conference on Computational Science and Engineering 275–282
2008, Mónica Denham, Emilio Luque, Tomàs Margalef, and Ana Cortés. Applying a Dynamic Data Driven Genetic Algorithm to Improve Forest Fire Spread Prediction. International Conference on Computational Science 36–45

2007

2007, Daniel Lázaro Iglesias, Josep Jorba Esteve, and Joan Manuel Marquès. Decentralized Service Deployment for Collaborative Environments. CISIS 229-234
2007, Domingo Benitez, Emilio Luque, Dolores Rexachs, and Juan C. Moure. Adaptive L2 Cache for Chip Multiprocessors. Euro-Par Workshops 28-37
2007, Josep L. Lérida, Porfidio Hernández, Jose Ramon Garc’ıa, Mauricio Hanzich, Francesc Giné, and Francesc Solsona. MetaLoRaS: A Re-scheduling and Prediction MetaScheduler for Non-dedicated Multiclusters. PVM/MPI 195-203
2007, Francesc Giné, Emilio Luque, Porfidio Hernández, Mauricio Hanzich, and Francesc Solsona. Cooperating CoScheduling: A Coscheduling Proposal Aimed at Non-Dedicated Heterogeneous NOWs. J. Comput. Sci. Technol. 22 695-710
2007, Manuel Brugnoli, Miquel A. Senar, Paul Hurley, Elisa Heymann, and Steven Willmott. Applying Internet Random Early Detection Strategies to Scheduling in Grid Environments. HiPC 587-598
2007, Mar’ıa M. López, Miquel A. Senar, and Elisa Heymann. Sensitivity Analysis of Workflow Scheduling on Grid Systems. Scalable Computing: Practice and Experience 8
2007, Raquel Egea, Antonio Barbadilla, Miquel Àngel Senar, Enol Fernández, and Sònia Casillas. MamPol: a database of nucleotide polymorphism in the Mammalia class. Nucleic Acids Research 35 624-629
2007, Leandro Souza, Fernando Cores, Ana Ripoll, Javier Balladini, and Xiaoyuan Yang. Improving VoD P2P Delivery Efficiency over Internet using Idle Peers. SIGMAP 297-304
2007, Leandro Souza, Ana Ripoll, Xiaoyuan Yang, and Fernando Cores. DynaPeer: A Dynamic Peer-to-Peer Based Delivery Scheme for VoD Systems. Euro-Par 769-781
2007, Concepció Roig, Fernando Guirado, and Ana Ripoll. A New Task Graph Model for Mapping Message Passing Applications. IEEE Trans. Parallel Distrib. Syst. 18 1740-1753
2007, Paola Caymes-Scutari, Emilio Luque, Tomàs Margalef, and Anna Morajko. Automatic Generation of Dynamic Tuning Techniques. Euro-Par 13-22
2007, Anna Morajko, Emilio Luque, and Tomàs Margalef. Design and implementation of a dynamic tuning environment. J. Parallel Distrib. Comput. 67 474-490
2007, Anna Morajko, Emilio Luque, Tomàs Margalef, and Paola Caymes-Scutari. MATE: Monitoring, Analysis and Tuning Environment for parallel/distributed applications. Concurrency and Computation: Practice and Experience 19 1517-1531
2007, F. Cedo, Emilio Luque, Miquel A. Senar, Ana Ripoll, and Ana Cortés. The Convergence of Realistic Distributed Load-Balancing Algorithms. Theory of Computing Systems / Mathematical Systems Theory 41 609–618

2006

2006, Juan C. Moure, Emilio Luque, Dolores Rexachs, and Domingo Benitez. Wide and efficient trace prediction using the local trace predictor. ICS 55-65
2006, Domingo Benitez, Emilio Luque, Dolores Rexachs, and Juan C. Moure. Evaluation of the field-programmable cache: performance and energy consumption. Conf. Computing Frontiers 361-372
2006, Domingo Benitez, Emilio Luque, Dolores Rexachs, and Juan C. Moure. A Reconfigurable Data Cache for Adaptive Processors. ARC 230-242
2006, Mauricio Hanzich, Emilio Luque, Porfidio Hernández, Francesc Giné, Mat’ıas Torchinsky, and Josep L. Lérida. Using On-the-Fly Simulation for Estimating the Turnaround Time on Non-dedicated Clusters. Euro-Par 177-187
2006, Mauricio Hanzich, Josep L. Lérida, Francesc Solsona, Francesc Giné, Emilio Luque, and Porfidio Hernández. Using Simulation, Historical and Hybrid Estimation Systems for Enhacing Job Scheduling on NOWs. CLUSTER
2006, Josep L. Lérida, Emilio Luque, Porfidio Hernández, Mauricio Hanzich, Francesc Giné, and Francesc Solsona. MetaLoRaS: A Predictable MetaScheduler for Non-dedicated Multiclusters. ISPA 630-641
2006, Enol Fernández, Miquel A. Senar, and Elisa Heymann. Resource Management for Interactive Jobs in a Grid Environment. CLUSTER
2006, Mar’ıa M. López, Miquel A. Senar, and Elisa Heymann. Analysis of Dynamic Heuristics for Workflow Scheduling on Grid Systems. ISPDC 199-207
2006, Enol Fernández, Miquel A. Senar, and Elisa Heymann. Supporting Efficient Execution of MPI Applications Across Multiple Sites. Euro-Par 383-392
2006, Leandro Souza, Fernando Cores, Emilio Luque, Xiaoyuan Yang, and Ana Ripoll. On the Relevance of Network Topologies in Distributed Video-on-Demand Servers. PDP 396-404
2006, Xiaoyuan Yang, Emilio Luque, Remo Suppi, Ana Ripoll, Leandro Souza, Fernando Cores, and Porfidio Hernández. DVoDP/sup 2/P: distributed P2P assisted multicast VoD architecture. IPDPS
2006, Leandro Souza, Fernando Cores, Porfidio Hernández, Xiaoyuan Yang, and Ana Ripoll. Designing a Video-on-Demand System for a Brazilian High Speed Network. ICDCS Workshops 43
2006, Xiaoyuan Yang, Fernando Cores, Emilio Luque, Remo Suppi, Ana Ripoll, Leandro Souza, and Porfidio Hernández. Multi-Collaboration Domain Multicast P2P Delivery Architecture for VoD System. ICC 1633-1640
2006, Fernando Guirado, Emilio Luque, Aura Hernandez, Concepció Roig, and Ana Ripoll. Exploiting Throughput for Pipeline Execution in Streaming Image Processing Applications. Euro-Par 1095-1105
2006, Xiaoyuan Yang, Emilio Luque, Remo Suppi, Ana Ripoll, Fernando Cores, and Porfidio Hernández. Providing VCR in a Distributed Client Collaborative Multicast Video Delivery Scheme. Euro-Par 777-787

2005

2005, Domingo Benitez, Emilio Luque, Dolores Rexachs, and Juan C. Moure. Performance and Power Evaluation of an Intelligently Adaptive Data Cache. HiPC 363-375
2005, Juan C. Moure, Emilio Luque, Dolores Rexachs, and Domingo Benitez. Target Encoding for Efficient Indirect Jump Prediction. Euro-Par 497-507
2005, Mauricio Hanzich, Emilio Luque, Francesc Solsona, Porfidio Hernández, and Francesc Giné. CISNE: A New Integral Approach for Scheduling Parallel Applications on Non-dedicated Clusters. Euro-Par 220-230
2005, Mauricio Hanzich, Emilio Luque, Francesc Solsona, Porfidio Hernández, and Francesc Giné. A Space and Time Sharing Scheduling Approach for PVM Non-dedicated Clusters. PVM/MPI 379-387
2005, Mauricio Hanzich, Francesc Solsona, Francesc Giné, Emilio Luque, and Porfidio Hernández. 3DBackfilling: A Space-Sharing Approach for Non-Dedicated Clusters. IASTED PDCS 131-138
2005, Derek Groen, A. Ramos, C. Kanellopoulos, Miquel A. Senar, Elisa Heymann, Brian A. Coghlan, Ján Astalos, Marios D. Dikaiakos, Wei Xing, George Tsouloupas, Evangelos Floros, Yannis Cotronis, J. Fontán, C. Fernández, Wojciech Wislicki, Adam Padee, Krzysztof Nawrocki, Michal Bluj, Pawel Wolniewicz, Andrzej Ozieblo, Patryk Lason, P. Nyczyk, V. Lara, J. Gomes, Farida Fassi, Javier Sánchez, S. Gonzalez, José Salt, D. Cano, I. Diaz, D. Rodr’ıguez, R. Marco, J. Marco, Harald Kornmayer, Markus Hardt, Ariel Garc’ıa, L. Bernardo, J. Martins, and M. David. Experience with the International Testbed in the CrossGrid Project. EGC 98-110
2005, Fernando Guirado, Emilio Luque, Concepció Roig, and Ana Ripoll. Exploitation of Parallelism for Applications with an Input Data Stream: Optimal Resource-Throughput Tradeoffs. PDP 170-178
2005, Paula Cecilia Fritzsche, Inmaculada Garc’ıa, José-Jesús Fernández, Emilio Luque, and Ana Ripoll. A Performance Prediction for Iterative Reconstruction Techniques on Tomography. PDP 92-99
2005, Xiaoyuan Yang, Emilio Luque, I. Mar’ın, V. Arnau, and Ana Ripoll. Genomic-Scale Analysis of DNA Words of Arbitrary Length by Parallel Computation. PARCO 623-630
2005, Xiaoyuan Yang, Emilio Luque, Remo Suppi, Ana Ripoll, Fernando Cores, and Porfidio Hernández. Dynamic Distributed Collaborative Merging Policy to Optimize the Multicasting Delivery Scheme. Euro-Par 879-889
2005, Xiaoyuan Yang, Fernando Cores, Emilio Luque, Remo Suppi, Ana Ripoll, and Porfidio Hernández. Distributed P2P Merging Policy to Decentralize the Multicasting Delivery. EUROMICRO-SEAA 322-329
2005, Fernando Guirado, Emilio Luque, Concepció Roig, and Ana Ripoll. Optimizing Latency under Throughput Requirements for Streaming Applications on Cluster Execution. CLUSTER 1-10
2005, Anna Morajko, Miquel A. Senar, Elisa Heymann, Alvaro Fernández, and Enol Fernández. Workflow Management in the CrossGrid Project. EGC 424-433
2005, Eduardo César, Emilio Luque, and Joan Sorribes. Modeling Pipeline Applications in POETRIES. Euro-Par 83-92
2005, Paola Caymes-Scutari, Emilio Luque, Joan Sorribes, Tomàs Margalef, José G. Mesa, Genaro Costa, Eduardo César, and Anna Morajko. Development and Tuning Framework of Master/Worker Applications. Automatic Performance Analysis

2004

2004, Eduardo Argollo, Dolores Rexachs, Juan C. Moure, Emilio Luque, Ferran Bonàs, Paula Cecilia Fritzsche, Germán Bianchini, Diego Mostaccio, and Mauricio Hanzich. Graduate students learning strategies through research collaboration. ITiCSE 262
2004, Eduardo César, Emilio Luque, Joan Sorribes, and José G. Mesa. Modeling Master-Worker Applications in POETRIES. HIPS 22-30
2004, Mauricio Hanzich, Emilio Luque, Francesc Solsona, Porfidio Hernández, and Francesc Giné. Coscheduling and Multiprogramming Level in a Non-dedicated Cluster. PVM/MPI 327-336
2004, Elisa Heymann, José Salt, Alvaro Fernández, Enol Fernández, and Miquel A. Senar. Managing MPI Applications in Grid Environments. European Across Grids Conference 42-50
2004, Elisa Heymann, Miron Livny, Emilio Luque, and Miquel A. Senar. Efficient resource management applied to master worker applications. J. Parallel Distrib. Comput. 64 767-773
2004, Paula Cecilia Fritzsche, Emilio Luque, Inmaculada Garc’ıa, Ana Ripoll, and José-Jesús Fernández. A Performance Prediction Model for Tomographic Reconstruction in Structural Biology. VECPAR 90-103
2004, Fernando Guirado, Emilio Luque, Concepció Roig, and Ana Ripoll. A Pipeline-Based Approach for Mapping Message-Passing Applications with an Input Data Stream. PVM/MPI 224-233
2004, Fernando Guirado, Emilio Luque, Concepció Roig, and Ana Ripoll. Performance Prediction Using an Application-Oriented Mapping Tool. PDP 184-191
2004, Xiaoyuan Yang, Emilio Luque, Remo Suppi, Bahjat Qazzaz, Porfidio Hernández, Ana Ripoll, and Fernando Cores. Supporting Caching and Mirroring in Distributed Video-on-Demand Architectures. Euro-Par 792-798
2004, Concepció Roig, Emilio Luque, and Ana Ripoll. Modeling Clustered Task Graphs for Scheduling Large Parallel Programs in Distributed Systems. Simulation 80 243-254
2004, Anna Morajko, Emilio Luque, Tomàs Margalef, and Oleg Morajko. MATE: Dynamic Performance Tuning Environment. Euro-Par 98-106
2004, Ana Cortés, Emilio Luque, Miquel A. Senar, and Ana Ripoll. Varying the domain size of the dynamic load-balancing algorithm DASUD for SPMD and MPMD programming scenarios. International Journal of High Performance Computing and Networking 1 180–192
2004, Baker Abdalhaq, Emilio Luque, Tomàs Margalef, and Ana Cortés. Accelerating Wildland Fire Prediction on Cluster Systems. International Conference on Computational Science 220–227

2003

2003, Juan C. Moure, Emilio Luque, and Dolores Rexachs. Optimizing a Decoupled Front-End Architecture: The Indexed Fetch Target Buffer (iFTB). Euro-Par 566-575
2003, Francesc Giné, Emilio Luque, Porfidio Hernández, and Francesc Solsona. Dealing with Memory Constraints in a Non-Dedicated Linux Cluster. IJHPCA 17 39-48
2003, Francesc Giné, Emilio Luque, Porfidio Hernández, and Francesc Solsona. Cooperating Coscheduling in a Non-dedicated Cluster. Euro-Par 212-217
2003, Francesc Giné, Emilio Luque, Mauricio Hanzich, Porfidio Hernández, Jesus Barrientos, and Francesc Solsona. Multiprogramming Level of PVM Jobs in a Non-dedicated Linux NOW. PVM/MPI 577-585
2003, Bahjat Qazzaz, Emilio Luque, Remo Suppi, Porfidio Hernández, Xiaoyuan Yang, and Javier Moreno. Admission control policies for video on demand brokers. ICME 529-532
2003, Elisa Heymann, José Salt, Miquel A. Senar, and Alvaro Fernández. The EU-CrossGrid Approach for Grid Application Scheduling. European Across Grids Conference 17-24
2003, G. Dick van Albada, C. Kanellopoulos, G. Merino, Miquel A. Senar, Elisa Heymann, Brian A. Coghlan, Ján Astalos, Marios D. Dikaiakos, Wei Xing, George Tsouloupas, Evangelos Floros, Yannis Cotronis, I. López, A. Gómez, J. Fontán, C. Fernández, Wojciech Wislicki, Adam Padee, Krzysztof Nawrocki, Michal Bluj, J. Gomes, Pawel Wolniewicz, Andrzej Ozieblo, P. Nyczyk, Ariel Garc’ıa, Markus Hardt, A. Fuentes, Javier Sánchez, S. Gonzalez, José Salt, D. Rodr’ıguez, R. Marco, J. Marco, L. Bernardo, J. Martins, and M. David. First Prototype of the CrossGrid Testbed. European Across Grids Conference 67-77
2003, Fernando Cores, Emilio Luque, Porfidio Hernández, Xiaoyuan Yang, Remo Suppi, Bahjat Qazzaz, and Ana Ripoll. Exploiting Traffic Balancing and Multicast Efficiency in Distributed Video-on-Demand Architectures. Euro-Par 859-869
2003, Fernando Guirado, Emilio Luque, Xiao Yuan, Concepció Roig, and Ana Ripoll. Predicting the Best Mapping for Efficient Exploitation of Task and Data Parallelism. Euro-Par 218-223
2003, Bahjat Qazzaz, Emilio Luque, Porfidio Hernández, Ana Ripoll, Fernando Cores, and Remo Suppi. Providing Interactive Video on Demand Services in Distributed Architecture. EUROMICRO 215-222
2003, Fernando Cores, Emilio Luque, Porfidio Hernández, Remo Suppi, Bahjat Qazzaz, Xiaoyuan Yang, and Ana Ripoll. Improving Bandwidth Efficiency In Distributed Video-On-Demand Architectures. Parallel Processing Letters 13 589-600
2003, Eduardo César, Emilio Luque, Joan Sorribes, and José G. Mesa. POETRIES: Performance Oriented Environment for Transparent Resource-Management, Implementing End-User Parallel/Distributed Applications. Euro-Par 141-146
2003, Anna Morajko, Emilio Luque, Tomàs Margalef, Josep Jorba, and Oleg Morajko. Automatic Performance Analysis and Dynamic Tuning of Distributed Applications. Parallel Processing Letters 13 169-187
2003, Helmar Burkhart, Thomas Ludwig, Tomàs Margalef, and Rudolf Eigenmann. Topic Introduction. Euro-Par 5-6
2003, Anna Morajko, Emilio Luque, Tomàs Margalef, Josep Jorba, and Oleg Morajko. Dynamic Performance Tuning of Distributed Programming Libraries. International Conference on Computational Science 191-200

2002

2002, Juan C. Moure, Emilio Luque, and Dolores Rexachs. Speeding Up Target Address Generation Using a Self-indexed FTB (Research Note). Euro-Par 517-521
2002, Juan C. Moure, Emilio Luque, and Dolores Rexachs. The KScalar simulator. ACM Journal of Educational Resources in Computing 2 73-116
2002, Francesc Giné, Emilio Luque, Porfidio Hernández, and Francesc Solsona. Minimizing Paging Tradeoffs Applying Coscheduling Techniques in a Linux Cluster. VECPAR 593-607
2002, Francesc Giné, Emilio Luque, Porfidio Hernández, and Francesc Solsona. Adjusting the Lengths of Time Slices when Scheduling PVM Jobs with High Memory Requirements. PVM/MPI 156-164
2002, Francesc Giné, Emilio Luque, Porfidio Hernández, and Francesc Solsona. Adjusting Time Slices to Apply Coscheduling Techniques in a Non-dedicated NOW (Research Note). Euro-Par 234-239
2002, Concepció Roig, Emilio Luque, Fernando Guirado, Miquel A. Senar, and Ana Ripoll. A New Model for Static Mapping of Parallel Applications with Task and Data Parallelism. IPDPS
2002, Fernando Cores, Emilio Luque, and Ana Ripoll. Cost-effective distributed architecture for large-scale video-on-demand. ICME (1) 13-16
2002, Fernando Cores, Emilio Luque, and Ana Ripoll. Double P-Tree: A Distributed Architecture for Large-Scale Video-on-Demand. Euro-Par 816-825
2002, Xiao Yuan, Emilio Luque, Fernando Guirado, Miquel A. Senar, Ana Ripoll, and Concepció Roig. AMEEDA: A General-Purpose Mapping Tool for Parallel Applications on Dedicated Clusters (Research Note). Euro-Par 248-252
2002, Eduardo César, Emilio Luque, Antonio Espinosa, Joan Sorribes, Tomàs Margalef, and Anna Morajko. Dynamic performance tuning supported by program specification. Scientific Programming 10 35-44
2002, Josep Jorba, Emilio Luque, Tomàs Margalef, Ángel Casquero, and Rafael Bustos. Web Remote Services Oriented Architecture for Cluster Management. PVM/MPI 368-375
2002, Baker Abdalhaq, Emilio Luque, Tomàs Margalef, and Ana Cortés. Optimization of Fire Propagation Model Inputs: A Grand Challenge Application on Metacomputers (Research Note). European Conference on Parallel Processing 447–451
2002, Baker Abdalhaq, Emilio Luque, Tomàs Margalef, and Ana Cortés. Evolutionary Optimization Techniques on Computational Grids. International Conference on Computational Science 513–522
2002, Ana Cortés, Emilio Luque, Miquel A. Senar, F. Cedo, and Ana Ripoll. An asynchronous and iterative load balancing algorithm for discrete load model. Journal of Parallel and Distributed Computing 62 1729–1746